Along with other analytical techniques, the analytical data bank of isotopic shift ranges in proteins from a pacsy database purged using intrinsic quality criteria.
23 mars 2021 — Fusmobile Inc. 2016-08-10. 52, EP16832393.9, EP3328408. MOTILE SPERM DOMAIN CONTAINING PROTEIN 2 OCH INFLAMMATION.
PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. Pfam - Database of protein families (HMM derived) PIRSF - Protein classification system based on whole proteins; PRINTS - Database of protein fingerprints (goups of conserved motifs) ProDom - Database of protein domains automatically generated from UniProtKB; SBASE - Database of protein domain sequences and related computational tools DOMINE is a database of protein domain (domain-domain) interactions inferred from PDB entries, and those that are predicted by 8 different computational approaches using Pfam domain definitions. 2. What is a domain? Domain is a structural or functional subunit of a protein.
Search for Conserved Domains within a protein or coding nucleotide sequence. Enter protein or nucleotide query as accession, gi, or sequence in FASTA format. For multiple protein queries, use Batch CD-Search. Pfam protein domain database.
An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc.
.The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. InterProScan is the underlying software that allows protein and nucleic acid sequences to be searched against InterPro's signatures.
Acts as transcriptional coactivator of estrogen and progesterone receptors (ESR1 and PGR) upon hormone activation. In presence of estrogen, binds to ESR1-responsive promoters. Required for YAP1 coactivation function on PGR activity. Synergizes with WBP2 in enhancing PGR activity (By similarity). Modulates expression of post-synaptic scaffolding proteins via regulation of ESR1, ESR2 and PGR
Because it has not been updated since December 2015, we removed ProDom from InterPro in release 74.0. Databases: Cut-off score (Click each database to get help for cut-off score) Pfam * E-value NCBI-CDD The ProDom database contains protein domain families generated from the SWISS-PROT database by automated sequence comparisons. It can be searched on the World Wide Web (http://protein.toulouse.inra. fr/prodom.html) or by E-mail (prodom@toulouse.inra.fr) to study domain arrangements within known families or new proteins.
av E Karlsson · 2014 — Bioinformatics databases and analysis tools . Genomic and protein databases . Figure 11 Domain structures and motifs of the known S6K1 and S6K2
Annotation systems. Systems used to automatically annotate proteins with high accuracy: UniRule (Expertly curated rules) ProDom is a database of protein domain families based on the automatic clustering of sequences by similarity . Because it has not been updated since December 2015, we removed ProDom from InterPro in release 74.0.
DOMO. DOMO is a database of homologous protein domain families. It was obtained from successive sequence analysis steps including similarity search, domain delineation, multiple sequence alignment and motif construction. 83054 non redundant protein sequences from SWISSPROT and PIR have been analysed yielding a database of 99058 domains
Integrated search in PROSITE, Pfam, PRINTS and other family and domain databases.
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InterProScan is the underlying software that allows protein and nucleic acid sequences to be searched against InterPro's signatures. 1996-06-01 2021-02-04 The ProDom database contains protein domain families generated from the SWISS-PROT database by automated sequence comparisons.
This database and its member databases are described below. 2018-10-24
Browse the database of all available domains in the SMART database; Download domain descriptions in tab delimited plain text; metaSMART. metaSMART is a novel integral part of SMART, dedicated to the exploration of protein domains and domain architectures in various metagenomics datasets. At the moment, the following datasets are publicly available through metaSMART:
2021-01-01
BTB Domain Database: This database catalogs BTB proteins found in 17 fully sequenced eukaryotic genomes.
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from IMSR strain data. Database Download. protein coding gene. 0610009B22Rik, RIKEN Aard, alanine and arginine rich domain containing protein.
SkRDPTEEIEILLR. Protein Kinase Domain. Bcl-2 family database: Sequence, structural and functional information about BCL-2 Protein-protein interaction database for death domain superfamily. Pfam is a large collection of protein families, represented by multiple sequence alignments and hidden Markov models (HMMs) Human nuclear valosin containing protein like (nvl), c-terminal aaa- atpase domain External database links av T Hatzihristidis · 2015 · Citerat av 9 — Y-Phosphatomer relies on a specific collection of protein domain models drawn from InterPro member databases [3].